On-line repository for Hypocrea/Trichoderma DNA sequences for correct taxa identification verified using ARB technology and phylogenetic analysis

01.12.2004 - 31.03.2007
Forschungsförderungsprojekt
The first version of the genus-specific fungal oligonucleotide BarCode for the identification of Hypocrea and Trichoderma species ¿ TrichOKey v. 1, was developed in 2005. The program provides an on-line method for the quick molecular identification of an unknown isolate at the genus, clade and species levels based on a diagnostic combination of several oligonucleotides (hallmarks) specifically nested within the internal transcribed spacer 1 and 2 (ITS1 and 2) sequences of the rRNA gene cluster. In this manuscript we report on the newly integrated modules to increase the reliability of the result and present the second version of the program - TrichOKey v. 2, which is powered by simultaneous identification of multiple sequences, complementary similarity search tool and has an advanced graphic interface.

Personen

Projektleiter_in

Projektmitarbeiter_innen

Institut

Grant funds

  • Hochschuljubiläumsfonds der Stadt Wien (National) Anniversary Fund for Higher Education of the City of Vienna

Forschungsschwerpunkte

  • Beyond TUW-research focus: 100%

Schlagwörter

DeutschEnglisch
Barcodebarcode
TrichodermaTrichoderma
Bioinformatikbioinformatics

Publikationen